Scaffold Ga0334722_10015072

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10015072
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6861
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F039481	Metagenome	163	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_1001507210	F055728	N/A	MRRSYDPHYGSREQLKNCHEHGMKVARERDALKTENAALLDEITELKALIKYMTEGE
Ga0334722_100150727	F039481	GAG	MPFIIKTVIAFALFTIGFSGNVLLQEPPLGQTDPVTAPYGSYTSFRDMQHDIWLYVPPSTTTTLPQPVYKHGDCSWLPALALKAGWQADQIGKLKQIALREAGCCPNRRGGDIVNKDCNITGVSEYSHRSDTGTLQINSVNFDISRNPYAPICLQMKICTQEPLLDPYTNLKAGKLLYDYWEKAAGDGWIPWDMCNRTKSCK
Ga0334722_100150728	F013413	GAG	MTENEYDETFDMRMEKEHQETLQRMKQFRLIGEQISKMPDTSPKVLEIEVRYLMGIISELEARVKDLESEARRLELLLTRAN