NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10001740

Scaffold Ga0334722_10001740


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10001740 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26210
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (46.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F002985Metagenome / Metatranscriptome515Y
F003601Metagenome / Metatranscriptome477Y
F075716Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0334722_1000174015F002985N/AMAYVIATYKDGLPYAVHACGQTNSFQLVALDSDVALNKIFSHPYRAGAYNILSWIEKNDDQLFSIDLDVYDEAKFRK
Ga0334722_100017402F003601AGTAGGMTEHTDEQLLAMAMANLGEYMHDNSPHYVLIEDPRNEDDFDTWDVGMEPIPGDQTWKSTAIDVESSKVND
Ga0334722_1000174020F075716GAGGMTTFNQFKFENTNNNSTLTLEVKADGCQEIVDEFISFMRGCGFMDVNIYSAMENAVEEHTSYQAHLGKSIELGMHDPIIKLGADVFNM
Ga0334722_1000174024F002333N/AMSYQTQTSLTATQASIYSRTNIRRAFSDFDDTDVAGIYLRDDSCVVAYHHGGELTYPREVIKTAFKAYTHRLKDFFAYLGPNYRGPSIWHNNAYVMFKGWNYNHALGNLTSNARLQAHWADKFIHLKDVNKVTTLLQSDQTDLGHLIAPDGLRLSDGEIDFDSDNEQEPNAGSSAPEPYCSCGSFQRQLANLSDFQMEITGYKPWCIHLTWFHKYRELLVKRADVRNEARGGAPMNCVAWWYAPPVDHNNNGRFVLLYTKHGSMAPLSHWRTYKPKEVFTQHDAWDLFFNMMDAGYVPFPGTSLPQLANAVKKQ
Ga0334722_1000174026F001018N/AMTQITQLKLKDLNILKLYEHYGALERSLPLLTPESQELAKAELEACIDIRSEKIDRIYYAMASHEDALSRIKQEGEMITQAKRHHESQIKQLKGLLNWLRRSAPLQTNRITGRNYEFVLVKKKDFTVEISSNLEDWDDVEQKQFCIQQEVTTTKQIVVRSMSGEILEERTDPKTTTEILPSLDAIRNAHQTGQHLPSGVKVFQEYSIRSKRIYRDKPMEFEASEYFGHVLPEVGATN
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