Scaffold Ga0334722_10000180

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334722_10000180

Scaffold Ga0334722_10000180

Overview

Basic Information
Taxon OID	3300033233 Open in IMG/M
Scaffold ID	Ga0334722_10000180 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	95070
Total Scaffold Genes	164 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (46.34%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5107	Long. (^o)	-110.3566	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F052965	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_1000018012	F015082	N/A	MSESDVFWTMATAAQYAGSFYQAMGNAGLAADPNNKRRILQAFPEMVATYGVASRLHQTMRAGVAA
Ga0334722_1000018017	F052965	GAGG	MDKPDLIEAAFRDWWFDSYNRPPNPQATMTHVAFANYILALLELTQDVQTP

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