NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272431_10002211

Scaffold Ga0272431_10002211


Overview

Basic Information
Taxon OID3300033181 Open in IMG/M
Scaffold IDGa0272431_10002211 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32904
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021587Metagenome / Metatranscriptome218Y
F066817Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272431_1000221112F021587GAGMMDRIVDALEQIRADEFDYEILHAASEVMGEDVAATWRPSLSYLAPERQGDGYHVTVFARGACESCPVKRLHVDSIEPKLRAIVGSDDVHVHDYFDMWDFGSGFQAVE
Ga0272431_1000221130F066817N/ATTPPAGGQAAPTTAATAAAKPAAEIAPPSPGVFNVWFSANWNTTTDEAVGNTFVEWGKQNGVKVEWQSIPGSPQQLAKESAAVAAGQPPELNNNDRTYWYSQGEMADLKDLVGRFKDKAGGMYDIAISSSTLADGAVIGAPYAVDVWPAHWRMDTIGAVTGGRFFDTWDELIELGPKAQQPPKTYTYAMALGHEGDHFNNIDTVLWGYGGRVADDKGVPDIANPANKAGIETIVRLWQAKLIPPDTFASTVTSWNNEAYQKGRGMIAINPATIMGWLLVNDKDLADKTGLSLPPKGPAGSFAEGAAIAFNYYKKAPMADKAVAALDYFMQPENLLKISKSVEGRFVPVYRDHATGEFWEKSKFAELKKIAEFGRIREWPAHSQAWMADVQDAKYTLSDMMQKIINDKMAIEDAQQWAQKEMMDSYNRAAKKP
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