Scaffold Ga0272431_10000162

Overview

Basic Information

• Taxon OID: 3300033181
• Scaffold ID: Ga0272431_10000162
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170145
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (23.53%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.6
  • Long. (^o): 161.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272431_10000162170	F001253	GAGG	VTFIKDAMKNVLISSTTSSSNDLFASKPLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLQIESLPLTKLKSIREFDDLYAKKLITHAIYSNLTVQDHMKRFVSMLITRL