NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272431_10000044

Scaffold Ga0272431_10000044


Overview

Basic Information
Taxon OID3300033181 Open in IMG/M
Scaffold IDGa0272431_10000044 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)267856
Total Scaffold Genes333 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)170 (51.05%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021896Metagenome216Y
F032102Metagenome180Y
F044226Metagenome154Y
F055319Metagenome138Y
F081945Metagenome113Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272431_1000004432F021896N/AVTKKNLKSEDFLKSVECNLIFLRSDKEYIFSDEMSERDSYSTIVINESFIKVREI
Ga0272431_1000004458F081945N/AMFSHSFIEEHFEEFRNCFSQISDADSTKSSSAVSFIHEDDESFTETIILLVFYEI
Ga0272431_1000004461F021896N/AVTKNNLESKDFFKNVECNLTFLKSDKEYIFSDEMNERDSYSTIVIDESSIKVREI
Ga0272431_1000004465F087980N/AMKSFYNLLINDERAVEQFTQSIIENSVKIFRVMQKLQNQVRQHDVITSSSFIIFSSSIYIKLNSQSLVIITQIIAQILNNQSSFIINFSANFVAVFITFRFKKLLDIFEYEKNKDRLNA
Ga0272431_1000004474F044226GAGMMKFSDNFNIFSITSMILFYFNKEFHLRMSFDSDMTDYEITHERLEARKADNIVI
Ga0272431_1000004477F055319N/AMIEVKVKRLKLVNKMICIQISEHDLTQRLNFSYEQRNFFIYIDDVIVVNVHDMQNEELFI
Ga0272431_1000004481F032102N/AMKIADLKKNISESIYKQILKTNEIDENCTLLCEAIARDETQYEDIKLKNCRTQNEILYHD
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Institute for Fundamental Biomedical Research
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