Scaffold Ga0307510_10070041

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10070041
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3506
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057784	Metagenome	135	Y
F061393	Metagenome	131	Y
F069507	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_100700413	F069507	GAG	VVDQVTCELKVAPTVLVERGKEGVKFFLGKVDDVGSGFFSELFKIKLGSGAKCFLSGLRSRW
Ga0307510_100700415	F061393	GAGG	VSKPKGRETRKNKLNRVQKSGLDVAKREVGGPRVFAYFGTNVDWGKGAVRVDMDGVMGVGAERGDEVQGCSGIEVLGPGDVVKELAVDEFL
Ga0307510_100700416	F057784	GGA	VPEKGFVIEQGDLGGWGLVKVMGARELPICSATSCCVKDVNKLVINVMIKALSTEETTKGKDV