 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033180 Open in IMG/M |
| Scaffold ID | Ga0307510_10028751 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6345 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Chaetothyriomycetidae → Chaetothyriales → Herpotrichiellaceae → Cladophialophora → Cladophialophora carrionii → Cladophialophora carrionii CBS 160.54 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 45.654 | Long. (o) | -122.839 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011464 | Metagenome | 290 | Y |
| F011985 | Metagenome | 284 | Y |
| F061393 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307510_100287512 | F011464 | N/A | MICHVLINGLDARLKRILSYDSVDDQFLDRSCVIFLGSRGRRFPGSRADKSRDVRMAEGSHDESRVGSCDMFPWSHDAEVVGL |
| Ga0307510_100287514 | F061393 | GAGG | VSKPKGREAQENKLNRVQKGGLDIAEWKVEGPQVLAYFGTDVDWGKGAIRMDVDGVMGVGAEGGDEEWGCGGVKVLGPGNVIEELAVDKLLG |
| Ga0307510_100287516 | F011985 | N/A | VANFRKEILRQTYSRIANLQEQVQLTYWSEHHLVPQDLLDILPFGCLFSAQRFYHYIDFQLVDILNAARHCTTYWLLSGAHNFDQSPATQISLFYDETFLWHYFVPLVRSEIITQIQAGHRIIFLSRFFVSETKVEVEFNEIRLQTIPSGDFTSTGLYQFIYSDERILTYHWNNHAWTTDLLTPHTSLIDPPSHFTLPITQPNTQGRDTEYLERFQHILLEPDLLMLNSSYHDSVDSSLPPTLVGTPESSPPSTPESVYRRAQEITFSNDNPDLCFYRIDLCCCDSRYPGTPPTPLGIHLWDPRFFRAGPVESLHYNRQPGQST |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |