Scaffold Ga0307510_10000370

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10000370
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42559
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (61.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011464	Metagenome	290	Y
F011985	Metagenome	284	Y
F016489	Metagenome	246	Y
F029295	Metagenome	188	Y
F055313	Metagenome	138	Y
F061393	Metagenome	131	Y
F075486	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_1000037014	F029295	N/A	MRIILSSVPKVKMVEVANPELGSLWWTEDMGVENRKGCLRSQGFLYCLVDFQSLLVDPKRGDPWS
Ga0307510_1000037015	F016489	N/A	MSRDAWKTSWIFQVGGNLILYATLDIWETTSKGPYLLGDNLGVMLLGSHRFVPSNQTLDLTGNGECCGHSLIQDSCTLRCASWAAFLASSIAESHCSRDGISVFLVG
Ga0307510_1000037016	F075486	GAGG	VPVVLLSATEYMKVLFKGLVSSFAGSICLRVIGCADVLADIQDVT
Ga0307510_1000037026	F055313	N/A	VVVLLIVNGVLVRVAGGREARWGSKEVLEGGDIDRRIEYRERSRSG
Ga0307510_1000037027	F061393	GAGG	VREPKGKEVRKDKLNRVQEGGLDITKGEVGGPWVLAYFGTDVDWGKGAVRVDVDGVVGVSVEWGDEVWGCSGVKVLGPGDMVEELAIDEFL
Ga0307510_1000037028	F011985	N/A	VANFHEEILRQTYSRIANLQEQVQLTHWSEHHLVPQDLLDILPFGRLFSTQCFYHYIDYQLIDILNTARRCTVYWQLSGAHNFDQSPATQISLFYNKTFLWHYFVLSHRPEIITQIQAGHQIRFLSRFYMSETKVEVEFNEIRLQTNPSREFTSTNLYQFIYSDEQILTYQWNNRAWTTELLAPHTSLIDPPSHFTLPITQPNTQGRDTEYLEHFQRILLEPDLLMLNLSYHNSVDSSLPPTLVGSPQSSPPSTPESVYWCAQEITFSNDNLDLCFCGINLCRCNSRYPGTPPTPLGIHLWDP
Ga0307510_100003706	F011464	N/A	MLINGLDTHPKRIWSGDIVDNQFLDRSCVIFPGSRGRRFPGSRANKSCDVQVMEGSHDESRVGSCDIFPQSHDAEVTGL