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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033179 Open in IMG/M |
| Scaffold ID | Ga0307507_10009356 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13103 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005943 | Metagenome | 385 | Y |
| F014479 | Metagenome / Metatranscriptome | 262 | Y |
| F015182 | Metagenome | 256 | Y |
| F054477 | Metagenome | 139 | Y |
| F091119 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307507_100093563 | F014479 | N/A | VGLEGFQLLSGSVITVIEGVCVFLSGDYRYARVFKLLVHLGIRACSAVLPRGLYCRNLLLSEGPSYFGATAFYKVSVEFLFRLSRDFKGGMVGINKM |
| Ga0307507_100093565 | F054477 | N/A | VSASLGIKARANKFNSPRINWRYRLSIGIGLFFRFNIVASKEYYLTIMGSLEV |
| Ga0307507_100093566 | F005943 | AGG | VVKRRNVMLWDGGSGYKTYVFEESIRRYAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYRGPYSRVP |
| Ga0307507_100093567 | F091119 | AGG | MLRNRGNGYKVYIFRESTRRCAIDRKGRGRKEVIYPRVADISYI |
| Ga0307507_100093568 | F015182 | GGCGG | VTKVISNFFKKIFLVFSIVLGKDSSIFLEFNIELVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |