Scaffold Ga0307507_10006921

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10006921
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16890
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F032886	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100069211	F002220	N/A	FRERMHLLKSNSIVKLSFSFSFAIRFAFTSSSSLRAKNWSSPKIIVLLVYIPTIPNGVPVVVIRKQGLNIEVVIKSFSL
Ga0307507_100069213	F021494	AGG	VSYIPTSASISKSVIVSSSSPSLTGRLYALYRLAINIRFATFSLILNYPGLKLAIAIHRGLPIGRPLPYIPYNLYVPIQSGDITRRHF
Ga0307507_100069214	F020829	AGGA	VPLVSSKLITNIIFSIYGTPLTLGLYTLIICTGPLYVWIIITTISKLTACYNYKDRLTALLIIKHTYMAAFGLYRSWNP
Ga0307507_100069215	F000630	N/A	MLERRIGVKGIEANLDKRNLSHGIVNAIGGEYLRALKRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSR
Ga0307507_100069216	F032886	N/A	MELEYLLINSNKEEREANWERLNLNNVIEVETKTTIERGLVTDVIILLDIISIAL