Scaffold Ga0307507_10005862

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10005862
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19585
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F016255	Metagenome	248	Y
F025697	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100058621	F016255	N/A	MPLSIIPSFTPLNTSDSYLVKELNIHNINNKIIKDAFKDALSFTNPLESLPKE
Ga0307507_100058624	F025697	AGAAG	LLSLFLEALGGGSREVDGKVADSKVAYSKDIGSGKASSKKVSGFLVDFALSLLLLSTKPCKERFSIYLLKLY
Ga0307507_100058628	F000630	GAG	MGVKGIEVDLGKGNPSHSIGNIMGGKYLRALKGPNKGGKYNGNTLKDRNNRTKRLALLGGCPSK