Scaffold Ga0307507_10005282

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10005282
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21405
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071804	Metagenome	121	Y
F075405	Metagenome	119	Y
F087969	Metagenome	109	Y
F096295	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100052821	F071804	GGA	VDVGYYPRQVGEKGELSKNDRREHKIRRAVRTRLGREGSEKTIPEVEPQERTILNLRSQLDHAAQSIVAKPNDFKQHDKEKEKLLQTYNRVKQRMPLSGGMLWQGGV
Ga0307507_100052822	F096295	N/A	MEACATSLLGEPADDGLVRVALLATRWASLSGVPESRSCQTTGRGAEDDLLIVTCIHSGLSWVPPVESLDCVVCIVQVFCGVPDFIVFW
Ga0307507_1000528226	F087969	N/A	MDAKGEARIRLKNMKQAKQSVTEYWNEFRLLASEAELDDSNGGELLLDGMIAELQNAWGASSDEYEDLETLAQWAIRKESNLAMVRHNAGSPSTKNIQQETITPRNLDGTSRPRNNGNQNYDNPMELDVMRKRPGLNSSSEEVQKRKQEQLYLECGRPGHLAGSCPKKAGPKPFNAQASSWQPAKKTAPWHTRTHIREI
Ga0307507_1000528229	F075405	GGTGG	MNTHGVEFSIAGCVREMVRDPNLLPRGCPYIGVLPSTLALRNSSPRVTRLMTHS