NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10004849

Scaffold Ga0307507_10004849


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10004849 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23111
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F029000Metagenome189Y
F082146Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100048491F029000N/AMQYIIPMDLINAILVAKYFVKYVFKLYGLPNLIISNYRSQFILDFWQALCK
Ga0307507_100048492F082146N/AMFYISLLQPLKDNPITYKVPPLPPVIINNGNGSYFINSINNI
Ga0307507_100048493F003725N/AMENLINLYTYLKETAKLVQERIKKYYNIKRSKGPDLKEGDKAWLLYKKFKS
Ga0307507_100048495F002555AGTAGMLGIFKDKDKEEGDSITDNLSIILQLLREELEEAS

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