Scaffold Ga0307507_10004335

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10004335
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25375
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F006298	Metagenome	376	Y
F029000	Metagenome	189	Y
F035578	Metagenome	171	Y
F074608	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000433511	F035578	GGA	VVVVGDIVEGIINVNYKAIVEVLMEVYFTIISKRNATFIRS
Ga0307507_1000433512	F074608	N/A	MEYRLVIKNSNGLYTIYLTILSKVLVGRVVLNFYIYKKLFGLINLTLKIFFAFILN
Ga0307507_1000433513	F002220	N/A	MESLFRERIYLLKSNSVVKLSLSFSFAMSFTFTSASSLRAKNWSLPKIIILLVYMLTILNRVPIFIIRKQGLNIEVVIKSFSL
Ga0307507_100043357	F006298	N/A	MKRRLVIKDSNGLYAIYLTILSKVLVGRVVLNFYIYKELFGLVNLTLKIFFAFILNQEALEVGYSNLLVSNILCALAKLIICLLLSIKGVPS
Ga0307507_100043358	F002220	GGAG	MLIMLIFLSWPFWRKVIESLFRERMHLLKSNSVVKLSFSFSFAIRFAFTSLSSLRAKNWSSPKIIVLLVYMPTIPNGVPVVIIRK
Ga0307507_100043359	F029000	N/A	MQYIIPIDLINAILVAKYFIKYVFKLYRLSNLIISNYKS