Scaffold Ga0307507_10003896

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003896
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27706
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F064533	Metagenome	128	Y
F075511	Metagenome	118	Y
F093556	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000389612	F093556	N/A	MAYPTAPMQYPPAINPLPAELGSNILDSEFNDDILDTLVPDLVPNLNKLELLGREV
Ga0307507_1000389613	F075511	AGG	MPASETLTELKLRILTGLVIGSLIITITRVYIVVYTRSLIIGLIGRKYGYSLYY
Ga0307507_100038965	F021494	AGG	MSYIPTSASISKSIIVSSSSPSLTSRLYTLYKSAANIRFAAFSLILNYPGLKLAIAVYRGLPIGRSLPCVPCDPYVPI
Ga0307507_100038966	F020829	N/A	MPLVSSKLITNIIFSVYGTPLTLGLYTLIIYTGPLYVWIVITAISRLTACYNHKDRLTALLIIKHIYMAAFGSYRSWNP
Ga0307507_100038968	F000630	GAG	MGVKGTEADLGKRNLSHGIVNAIGGKYLRALRRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSKQPKI
Ga0307507_100038969	F064533	GGA	MVIIGSPTHLLYLQIGISLGSSSKGAFKKSASFIAHFVLIKVKAFAPKLAKVEVKT