Scaffold Ga0307507_10003861

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003861
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27932
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007022	Metagenome	359	Y
F016500	Metagenome	246	Y
F019458	Metagenome	229	Y
F035578	Metagenome	171	Y
F064278	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100038611	F035578	GGA	MVARVEDIVEDIINVNYKVIVEVLMEVYLKTINRRNTMFIRS
Ga0307507_100038612	F019458	N/A	MKLDIFNKPKESSIFSFNDRYSANVFYSIMPDTRAAGVSIAGEP
Ga0307507_100038614	F016500	N/A	MDKLIVEVIETKKGLDAFYSIRGFLVIDRLNLLRVNFNSFYTNNKPKVLYTFYSKFIFPNINL
Ga0307507_100038615	F064278	N/A	MPLANTYYNTLINPTIVICFNYRKNSYFTIFCLKLKNIGNIKEIEEEKISNKLGKEIP
Ga0307507_100038616	F016500	N/A	LYQRLSYNPIIIDKLIVEITKAKKGLDALYSIRGFLVTDRFNLLRVNFNSFYTNNKPKVLYTFYSKFAFLNINL
Ga0307507_100038618	F007022	N/A	MVTCFNCGKDSYFTTSCLELKDIGNIKEIEEEEISNKLGKEEP