Scaffold Ga0307507_10003460

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003460
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30574
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F035639	Metagenome	171	Y
F038017	Metagenome	166	Y
F041673	Metagenome	159	Y
F061416	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000346011	F038017	GAG	VVRLTRYRFKLKDKDKPKVNLSYLVYYTLLWIAYIDNAYNIYRALKDKN
Ga0307507_1000346012	F035639	GAGG	MVNRLLDNNRILKERINGIGVVKVKLPLIKQFLGERLKLKGFLI
Ga0307507_100034602	F002555	N/A	VDDLEILGIFKDKDKEEGDSIIDALSTILQLLGEELVEAS
Ga0307507_100034605	F061416	GGA	MHFKVVQEGAKLAILLDQVTYIGLFLTGRALKWFKLYFTEI
Ga0307507_100034608	F041673	N/A	MAIKSLFRLIMFFLGMPYRPTSFLTTYKALLAGLSAGVCFRMGVAIGVMGRTWSVRVLLAVAAVRKVDV