Scaffold Ga0307507_10003447

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003447
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30639
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F005943	Metagenome	385	Y
F006298	Metagenome	376	Y
F019457	Metagenome	229	Y
F032490	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000344712	F032490	N/A	MLNSKNNPMPISKPRHQSVPGGFDLLALALTPKGKPSSLKDYNNYKGDIDNILSFINYITTDK
Ga0307507_1000344713	F005943	N/A	MLRNAGNGYKAYIFGESIRRYAIDHKGRGRKEVIYPRVADISYTRGVRKSMGFSYGGPCGRVPXQLFI
Ga0307507_100034472	F019457	GGA	MQTNNIIILGDNQFLALKEDKLVKANLIAKPKEKLSLIILLLFNRCILSLNKDSIALRQK
Ga0307507_100034474	F006298	N/A	MEHRLVIKNSNSLYTIYLTILSKVLVRKVVLNFHIYKELFDLINFTLKVFYAFILNQEALEVGRSNLTISNVSYTLTELIICLFLLIKGVSS
Ga0307507_100034475	F000746	N/A	MITTGLIEHIVAVVGNIEEGIINVNYKVTVEVLMEVYFKVIARRSATFIRS