Scaffold Ga0307507_10003436

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003436
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30744
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F017572	Metagenome	240	Y
F019457	Metagenome	229	Y
F038017	Metagenome	166	Y
F075511	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000343612	F038017	GAG	VVRLTRYKFKLKDKDKLRVNLKYIAYYTLLWIACVDNIYNMYRAPKDKN
Ga0307507_100034364	F000746	N/A	MVAMVGNTAEGIINDYKAKVEVLMEIYFKVIARRSATFVRN
Ga0307507_100034366	F075511	AGG	MPAFKALIKLRLRILTGLVIGSLIMIIIGVCIRVYTRSLIRGLIGRKYGYSLYRKAAYPK
Ga0307507_100034367	F019457	GGA	MQTNNIIILEDNQFLALKEDKLVKVNLIVKPKEKLNLITLLLFNKYTLSLNKDSIALRQK
Ga0307507_100034368	F038017	N/A	VVKLTRYRFKFKDKDELRVNLKHIVYYTLSWIACMDNIYNIHRAPKDKNQKYLVRIY
Ga0307507_100034369	F017572	N/A	MLKPVYGNIKPPVYKADTYKGQKEDKWQVLKIINHKEVDNEI