Scaffold Ga0307507_10003388

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003388
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31114
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F050927	Metagenome	144	Y
F067281	Metagenome	125	Y
F074608	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100033881	F067281	AGG	MLGIYCTYTSSRFNFRFIKPVTLKLHNYNSLEKTIIGKVEKHFIKHLNVAVLNTASTLTRMSSVYAPYIIGLSLN
Ga0307507_100033882	F050927	N/A	MPEYPVTRKEGIAYFIYKATPLLSIDADKETVREVIKQYILKVYNTHARYILYLYL
Ga0307507_100033885	F074608	N/A	MEHRLVIKNSDSLYAIYLTILSKVLVRRVVLNFHIYKELFNLINLTLKVFYAFILN
Ga0307507_100033887	F000746	N/A	MIITRLIKYIMAVVGDTAESTISVNYKAIIEVLIEVHFKVITRRSAIFIKSQITS