Scaffold Ga0307507_10003337

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003337
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F003725	Metagenome	471	Y
F008599	Metagenome	330	Y
F056201	Metagenome	137	Y
F061416	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100033371	F002555	AGTAG	MLEIFKDEDKEEGDGIIDALSIMLRLLGEELEEAS
Ga0307507_100033372	F056201	N/A	MAPSGSIELRGPNTLTRKIPYRRIPRWIIVVELFKKYLSMARRGKEIN
Ga0307507_100033373	F061416	N/A	MQEGAKLVIPMDQVAYIGLFLTGRALKWFKSYLTKI
Ga0307507_100033376	F003725	N/A	MENLINLYNYLKKIAELVQARIKRYYNSRRFKGLDLKEGDKV
Ga0307507_100033377	F008599	AGTAG	MGLLYRQKEYLYLLIIILGDLIAYKGGIINLKIEPI