Scaffold Ga0307507_10003200

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10003200
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32392
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F006298	Metagenome	376	Y
F015315	Metagenome	255	Y
F037003	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000320010	F015315	AGGAG	MGLATEGNNIGIYKACIKDALKNPTLSPLFGESNGLDLGPVPGFLPILTAVEELLIARIYVYLQVVRVRG
Ga0307507_1000320012	F037003	GAGG	MVEGEIKEYATKDETMEEMVEVKRNYLSVPVMHYLRTTPLTERACKDIL
Ga0307507_100032006	F000746	GGA	MVAMVGNTEEGIINVNYKATVEVLIEVYFKVIARRSAMFVRSQIAN
Ga0307507_100032007	F006298	GAG	LIIKNNNGLYTIYLTILSEVLVRGVVLNFYIYKELFDLINLTLKIFYAFILNQEALEVGHSNLAISNIFYTLTELVIYLFSLIKGVSS