Scaffold Ga0307507_10002957

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002957
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34128
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003457	Metagenome	485	Y
F035578	Metagenome	171	Y
F039539	Metagenome	163	Y
F074608	Metagenome	119	Y
F096933	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000295710	F039539	AGGA	VDLLEDNTPVELNKLSTLDFKKFIKLKKGLTNKELRKLLPKRYYDFINMCL
Ga0307507_1000295711	F096933	N/A	MTSGSMTKIIGNLFKEVFLVFSVILEEDSSVFLKLNIELIK
Ga0307507_100029572	F003457	N/A	MAKIVYSGFLASYTNRVAPIMWISKVLSKLRLSLVSYIVLGSVLGAKLVLDLGLGSLSIFFIVEYQFF
Ga0307507_100029576	F074608	N/A	MERRLVIKDSDSLCAIYLTILSEVLVRRVVLNFYIYKELFSLINLTLKIFFTFILN
Ga0307507_100029577	F035578	GGA	VAGVGDTVEGTINVNYKAIIEVLMEVYLKTINRRNAIFVRS