Scaffold Ga0307507_10002853

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002853
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34997
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002793	Metagenome	529	Y
F056201	Metagenome	137	Y
F064575	Metagenome	128	Y
F093556	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000285310	F064575	AGGA	MAPKASLSKRPASTQEEHEVQLGLEIKDNDDVIGVYKQIRALAAN
Ga0307507_100028532	F000630	GAG	MGVKGTEVDLGKGNPSHSIGNAMGGKYLRAPRGPNKGRKYNGNTLKNRNNRTKRLALLGRCPSR
Ga0307507_100028534	F056201	N/A	MAPSGSIELRGPNTLTRKIPYRRMPRGIIVVELSREYLSIAYRGKEKN
Ga0307507_100028536	F093556	AGTAG	MAYPTTPIQYSFAINSLPTKLGSNILDSKFNNNVLNTLVPNLMPNFNKLELLGYKV
Ga0307507_100028537	F002793	N/A	MDIIPLVDNLEILEIFKDKDNKKGDSIINALSIIL