Scaffold Ga0307507_10002591

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002591
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37355
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F007022	Metagenome	359	Y
F061416	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000259110	F007022	N/A	MVTCFNCGKDSYFTISYLELKDIGNIKEIEEEEMSNKLGKEEP
Ga0307507_100025912	F000746	GGA	MVAVVGDIAEGIININHKAIVEVLIEVYFKVIAKRSTIFIRSQIAS
Ga0307507_100025913	F007022	N/A	MVICFYYRKDSYFTLSCLELKDIGNIKEIEEEEISNKLEKKEP
Ga0307507_100025917	F000746	GGA	MVAVVSNTVEGTINNYKAKVEVLIEVHSKVITRRSTIFIRNRITS
Ga0307507_100025919	F061416	GGA	MHFKVIQEGVKLAILLDQVAYIGLFLIGRALKWFKPYLTEIQANGITTTNQDI