Scaffold Ga0307507_10002549

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002549
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37888
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003725	Metagenome	471	Y
F032886	Metagenome	178	Y
F078226	Metagenome	116	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100025492	F078226	N/A	VLDTDANKNTNNNNSEEELEDPNGYYLTLFRTLTIDKATSINVELANKAYAHLLTATSMEPTMETNPFNYNTTTAVLCYTSTVFIGIIINTSTLKKSMAGYR
Ga0307507_100025493	F032886	GGA	LVIIIIELEYLLISSDKEENKANWEYLYLSNAIEEETETTIERGLVIGIITPLDTASIAL
Ga0307507_100025495	F003725	GGAG	MNLYIDLKETAKLVQERIKRYYNAKRFKGPDLKEGDKVWLLYKNFKS
Ga0307507_100025499	F102221	GAG	MAYVLEVVSLLFKAVNYSQQFLIVGIIPNFRSLEFSAIECYRSLIKLGSI