Scaffold Ga0307507_10002508

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002508
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38326
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F007022	Metagenome	359	Y
F014479	Metagenome / Metatranscriptome	262	Y
F020829	Metagenome	221	Y
F080892	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000250810	F000247	AGG	VYTYVIYITLNYKRTPCIEVAYTNYLTSSLNISISKTLVPSSSILFTHLFIDRKLYYNSSLSLNKSIDPTSTSL
Ga0307507_1000250812	F007022	N/A	MYFNYRKDSYFATSCLELKDMGNIKEIEKEETPNELGKEEP
Ga0307507_100025082	F080892	AGAAG	MPVINTTEDLLLLAVSTCADPLDVEILVINIIEDLLLLAVSTYRDSLVLA
Ga0307507_100025084	F014479	AGTAG	VSVIKGIYIFLSGNRRYIRVFKLLVHLGIRARLAILPRGLYCRNLLLLEGPSYLNSTAFYKVSTEFLFRLLRSFLREE
Ga0307507_100025088	F020829	AGGA	VPLVSSKLITNIIFFICGTPLTLGLYILIIYTGPLYIWIVITIISRLTAYYNYKDRITALLIIKHIYIAAFGLYRS