Scaffold Ga0307507_10002410

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002410
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39396
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F024756	Metagenome	204	Y
F054477	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100024102	F024756	GGA	MPIYSIAHCIMVGESTGTNSLKHLIPRLGSIIAAGEMEASNLYKTFLDFLL
Ga0307507_100024104	F000630	GGA	MLERRIEVKGIEVNLGKRNLSHGIVNAIGGKHLRAPRRPNKGRKYNSNTLKNRDNRTKRLALLGRYPSRQPKMQI
Ga0307507_100024105	F020829	AGGA	VPLVSSKLITNIIFFIYRTPLTLGLYTLIIYTGPLYVWIVITIISRLTACYNYKDRLIALLIIKHRYIAAFGLYRSWNP
Ga0307507_100024106	F021494	AGG	MSYIPTSASISKSVIVFGSSPSLTSWLYALYRLAANVRFAAFSLILNCPSLKLAIAVHRGLPIGRPLPCVPYNPYIPI
Ga0307507_100024108	F054477	N/A	VSTSLGVKARANKLNSSRINWRYRLSVGIRLFFRFNIVASKEYRLTIIGSLEV