Scaffold Ga0307507_10002378

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002378
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39767
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003725	Metagenome	471	Y
F020829	Metagenome	221	Y
F032105	Metagenome	180	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100023781	F020829	AGGA	MPLVSSKLITNIIFSIYRTPLALGLYILMIYTRPLYIWIVITVISRLTACYNYKNRLIALLIIKYTYIAAFGL
Ga0307507_1000237811	F032105	GGA	MDVIITTKVPQLKLVRIIDILKGNVLSLTIMADKILLKTIKVTISNCLVYMPEVVKLFFKPLLLPLIEPYQ
Ga0307507_100023783	F102221	GAG	MACVLKVVSPLFKAVDYSKQFLIVGIIPNFRSLEFSAIEYYRSLIELGSV
Ga0307507_100023787	F003725	N/A	METLINLYANLKETAKLVQERIKRYYNTKRSKEPDLKEGDKV