Scaffold Ga0307507_10002359

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002359
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40001
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F005943	Metagenome	385	Y
F032490	Metagenome	179	Y
F039539	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000235910	F000630	GGAG	MGVEGTEADSGKRNPSRGMVNAIGGKHSRAPRRPNKGRKYNGNTLKNRDNRTKRLALLGRCPSRQPKIQM
Ga0307507_1000235911	F032490	N/A	MLNLKNNLIPILNPQRQLILGGFNLLTIALTPKGKPSSLKDYNNLNKVDINNILFFINYITTDKQAKGLLPIEIKI
Ga0307507_1000235912	F005943	AGG	MLWDGGNGYRTYVFGESIRRCAIDRKGRGRKEVIYLRVADVSCTRGVRKSTGLSYGGPYGGVPXQ
Ga0307507_1000235913	F039539	GAG	MEAPMVGFRDNRTDIVNLLKNNTPIELYGLLPLDFKKFIKLKKGFTNKELHKLLSKRYYNFINIYL
Ga0307507_100023596	F000247	N/A	MEVAHTNYLIGSLNTSIGKTLVPNSGVPFTYPSAGGKPYYNGSLSLNGSIDPTSIGL