Scaffold Ga0307507_10002134

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002134
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42536
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F003725	Metagenome	471	Y
F021494	Metagenome	218	Y
F038017	Metagenome	166	Y
F064278	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100021341	F003725	GGAG	MNLYIDLKETAKLVQEQIKRYYNAKRSEGPDLKEGNKVWLLYKNFKS
Ga0307507_1000213411	F064278	N/A	MYPANAYRNTLINPTMVTCFNYRKDNYFATSCLELKDIGNIKEIEEEELSNKLGKEEP
Ga0307507_100021344	F038017	GAG	VVRLTRYRFKLKNKDKLRVNPKHIAYYILSWIACVDDIYNIYRAPKDKNRKYLARIY
Ga0307507_100021348	F000630	GAG	MGVKGIEAGLDKRNLSYSMVNTIGGKHLRALRRPNKSRKYNSNTLKNRNNRTKRLALLGGRPSR
Ga0307507_100021349	F021494	AGG	MSYIPTSASISKSVIISSSSPNFTSWLYTLYKLAINMRFAILSLILNCPGLKLTIAIYRGLSTGRPLPYVPCDPYIPI