Scaffold Ga0307507_10002087

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002087
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43218
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F007022	Metagenome	359	Y
F019457	Metagenome	229	Y
F024756	Metagenome	204	Y
F044237	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000208711	F024756	GGA	MPIRSIAHYTTAGESAGTNSLKRLVPRLESAIVAGEIEINNLYKTFPDLLL
Ga0307507_1000208713	F044237	N/A	MYKLNLLAKIKIYPIQYIAMLEPVYGNIKPLVYKADTYRG
Ga0307507_100020874	F007022	N/A	MVTYFNCGKDSYFIISCLELKDIGNIKEIEEEEIFNKLGKEEP
Ga0307507_100020877	F000746	AGTAGG	MEEGIINVNYKATVEVPVEVYFKVIARRSAMFIRS
Ga0307507_100020879	F019457	GGA	MQTNNIIILEDDQFLALKEDKLVKANLIAKLKEKLSLTILLLFNRCILSLNEDSIALRQK