Scaffold Ga0307507_10002006

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10002006
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44154
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Mytilinidiales → Argynnaceae → Lepidopterella → Lepidopterella palustris → Lepidopterella palustris CBS 459.81 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004318	Metagenome / Metatranscriptome	443	Y
F005943	Metagenome	385	Y
F008599	Metagenome	330	Y
F053802	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100020062	F008599	AGG	MGLLYRQKEHLYLLITILGDQIAYKGGIINLKIGPI
Ga0307507_100020065	F005943	AGG	MLWDGGNSYRTYVFGESTRHYAIDRKDRGCKEVIYLRVADVSYTRGVRESTGLSYRGPYGGVP
Ga0307507_100020066	F004318	N/A	MFKVLSKLRLSLVSYIVSYLGLGLVLGIELVLDLGLGFLSIFFIVEY
Ga0307507_100020067	F053802	AGCAG	VDSRAIRNYILPAVVKRIGLLYRQREHLYLFITISRDLIAYRGGIINLKTRPI