Scaffold Ga0307507_10001932

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001932
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45029
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F032886	Metagenome	178	Y
F044237	Metagenome	154	Y
F075511	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000193213	F075511	AGG	MTWNYTSPLRPCIPAFKILIELKLRILTGLVIGSLIITITKVHIGVRTRSLIRGLIGRKHGYSLYHRAAYPK
Ga0307507_1000193218	F002555	AGTAG	MLGIFKDKDKEEGDSVTDSLSIILQLLREELEEAS
Ga0307507_1000193219	F044237	N/A	MYKLNLLAKMKIYPIQHIAMLELVYGNIKPLVYKADTYRGQEEDKW
Ga0307507_100019323	F032886	N/A	MELEYLLINSNEEEEEANWEYLYLSNVIEAETKTTIEYGLVTDIITLLDIVSIAL
Ga0307507_100019325	F002555	AGTAG	MLGIFKDKDKEEGDGVIDSLSIILQLLREELEEAS