NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001881

Scaffold Ga0307507_10001881


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001881 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45745
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F084969Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100018811F002555N/AVDIIPLVNNLEILEIFKHEDKEEGNGVINALGTILRLLKEELEEASWLIRA
Ga0307507_1000188113F003725GGAGMNLYADLIEIAKLVQERIKKYYNTKRSEGLDLKEGDKVWLLYKNFKS
Ga0307507_100018814F084969N/AMPLKALVITLSTAATTLGLGGDASIRDIDSQLVIVG
Ga0307507_100018819F003725N/AMETLINLHNYFKKTVKLVQERIKRYYNTRRSKGPDLKEGDKVWLLHKNFKS

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