Scaffold Ga0307507_10001856

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001856
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46172
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002555	Metagenome	548	Y
F003725	Metagenome	471	Y
F014479	Metagenome / Metatranscriptome	262	Y
F038017	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100018561	F000630	GAG	MGVKGTKVDLGKGNLSYSIGNAIGGKYLRALKGPNKGRKYNSNTLKDRNNRTKRLALLGRCPSG
Ga0307507_1000185611	F038017	GAG	VVRLTRYRFKLKNKDKLRVNLKYVAHYTLLWIACVDNMYNMYRAPKDKN
Ga0307507_100018564	F014479	N/A	VGPEGFWLLSGGVISVIEGVCVFLSGNCRCARVFELLVHLGVRARLAVLSRGLYCRNLLLLKGPSYLNITAFYKVSVEFPFRLSRDF
Ga0307507_100018565	F000247	AGG	VRTNIIYITLSCKRTPHIEVAYTNCLISSLNTSIGKTPVPSSSVPFTHPSTGGKPYYNSGLSLNRSIDPTSIGL
Ga0307507_100018568	F002555	GGA	MLGIFKDKDEEEGDGVMDALSTVLQLLREESAEASWLI
Ga0307507_100018569	F003725	GGAG	MNLYVDLKETAKLVQERIKRYYNAKRSKGPDLKEGDKVWLLHKNFKS