Scaffold Ga0307507_10001697

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001697
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48820
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016500	Metagenome	246	Y
F019457	Metagenome	229	Y
F026200	Metagenome	198	Y
F064278	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000169711	F026200	N/A	MLVHLFIMYIKDLFKFLLVCNVAIIVSFSYFSCDITTFLFINAYLTRDLFRELEADF
Ga0307507_1000169715	F019457	GGA	MQTNNIIILEDDQFLALKEDKLVKTNLIAKLKEKLNLITLLLFNKCILSLNKDSIALRQK
Ga0307507_1000169716	F064278	N/A	MTAYLRTLPDLLYTIPLTNARCNTLIDPAMVICFNCGKDSYFATFCLELKDIGNIKEIEEEETSNKLRKEEP
Ga0307507_100016976	F016500	GGA	MVEITEAKKGLDTFYSIRRFPVIYYLYLLRVNFNFFYANNKPKVLYLFYSKFIFLNINL
Ga0307507_100016977	F064278	N/A	MPLANARCNTLINPTIVICFNCGKNSYFAISCLELKDMGNIKDIEEEEMSNKLGKEKP