Scaffold Ga0307507_10001652

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001652
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49380
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002555	Metagenome	548	Y
F006298	Metagenome	376	Y
F035578	Metagenome	171	Y
F060493	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100016521	F060493	N/A	MRKDFVVLMLSLDISGAYNNIPYKHLLYILRAKGFLE
Ga0307507_1000165210	F006298	N/A	MERRLVIKDSNGLYTIYLTILSEVLVKKVVLNFYIYKELFNLVNLTLKIFFTFILNQEALEVGRSNLIISNVSCALAKLIIYLLLSIKRVPS
Ga0307507_1000165211	F035578	GGA	MVAGVGDTVKGTINVNYKAIVEVLMEVYLKTINRRNATFIRS
Ga0307507_1000165212	F002555	AGTAG	MLGIFKDKDKEEGDSIMDALSTMLWLLGEELEEAS
Ga0307507_100016522	F000630	GGA	MLERRIGVKGIEADLGKRNPSHGIVNAIGGKHLRALRRPNKGRKHNSNTFKNRDNRTKRLALLGRCPSRQPKIRI
Ga0307507_100016523	F060493	N/A	MRKDFIVLMLSLDISGAYNNIPYKRLLYILREKGFLE