Scaffold Ga0307507_10001637

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001637
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49591
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007161	Metagenome	356	Y
F013992	Metagenome	266	Y
F014479	Metagenome / Metatranscriptome	262	Y
F050242	Metagenome	145	Y
F078050	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000163711	F014479	N/A	VGLKGFWLLSSSVITVIKGVYVFLSVASNHRYVRVFKLLVNLNIGAYSAVLPRGLYCRNLLLSEGPSCLSATAFYKVFIEFLFRSLQDFKGG
Ga0307507_1000163713	F078050	N/A	MVDIKERLNKEKQLEDLREKVRARRKDSDDIMVQLTH
Ga0307507_1000163714	F013992	N/A	MAVVVVLYIAVNIYNHSRLVVAVANNSVGLIFSRVGRRDLGMCFGNKLSP
Ga0307507_1000163715	F050242	GGA	MRLCVPTSTAKDVGHFSLGSREVVRIDFKLVLQLNLLIVECRVSSVCKQ
Ga0307507_100016377	F007161	AGCAG	VLYYLVNRYKSDRGIVLKLGLKVPLGIPCGLTKEVEHFGFFRKEIVVVNAELSLYLNPLILKGRVYPIG