Scaffold Ga0307507_10001620

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001620
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49813
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F002793	Metagenome	529	Y
F003725	Metagenome	471	Y
F004663	Metagenome	428	Y
F006298	Metagenome	376	Y
F014479	Metagenome / Metatranscriptome	262	Y
F032886	Metagenome	178	Y
F071034	Metagenome	122	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000162010	F004663	AGG	LEESRLGNINKERSLKKELPKGDLRGAITKLLGVISLTGGEPILLLPSLDKPC
Ga0307507_1000162011	F002793	N/A	MDIIPLVDNLEMLGIFKDKDKEEGDGVTDALSIML
Ga0307507_1000162012	F014479	N/A	VGLGGFRLLSSSIITVVEGVCVFLSVAGNRRYVKVFELLVHLGIRARLAILPRGLYCRNLLLLEGPSCLSATAVHEVFIEFLFRSSRDFKGG
Ga0307507_1000162016	F071034	N/A	VHCVVGETSRYFTTLVAVPAIKISFYLRISYLCSSFSIVKTIEPNLVSRLCLFILDKIHLGNPYIFIGLKVLISSFKSLAPSSPRKGRVGTL
Ga0307507_1000162018	F002220	AGG	MHLLKSNNIIKLSFFFGFTIRFAFTSLSSLRAKNWSSPKIIILLVYIPTIPNRVPIVVIKKQGLNIKVVIKSFSL
Ga0307507_1000162020	F006298	N/A	MERRLVIKNSDSLYTIYLTILSEVLVRGVVLNFHIYKELFGLINLTLKVFYAFILNQEALEVGHNNLTISNISCTLAKLIIYPLLLIKRVLS
Ga0307507_1000162023	F000630	GGAG	MGVKGIEVDLGKGNPSRSIGNAMGGKYLRALRGPNKGRKYNGNTFKDRNNRTKRLALLGGYSSG
Ga0307507_100016203	F000247	N/A	MHVVLSYKYTPRTEVARTNCLTGSLNIFADITPVPSSGVPFTHLSTGRKPYYNGGLSLNESIDLTSTGL
Ga0307507_100016204	F102221	AGTAG	VLKVVSPLFKTVDYSKQFLIVGIIPDFRSLEFSAIEYYRSLVELGSVQMPIRLQ
Ga0307507_100016206	F032886	AGCAG	MELEYLLINSNKDEKEANWEHLNLNDATEAETKTTTKRGSVTDIATPLDMISIAL
Ga0307507_100016209	F003725	GGAG	MNLYTDLKETAKLVQERMKRYYNAKRSKGPDLKEGDKVWLLYKNFKS