Scaffold Ga0307507_10001602

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001602
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50036
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032105	Metagenome	180	Y
F039539	Metagenome	163	Y
F041673	Metagenome	159	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000160219	F041673	N/A	MAIKSLPRLVIFFLGIPCRPTSFFTTHEALLAGLSAGVCFYMGVAVGVTGRTWLVRVLLAVVAIYKVDV
Ga0307507_100016022	F039539	AGGA	VDLLEDNTPVKLNKLLTLDFKKFIKLKKGLTNKKLRKLLPKRYYDFINICL
Ga0307507_1000160223	F032105	GGAG	VDAIIIAKALQPKPVRIINILKGNILSLTIIADKILLKTIKVTISNCLIYIPKVTKLFFKPLLLPLIEPY
Ga0307507_100016024	F091119	AGG	VVEKRRNVMLWGGGSGYRTYVFEESIRRCAIDRKDRRRRKVIYYAWLT