Scaffold Ga0307507_10001575

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001575
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50569
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002793	Metagenome	529	Y
F019457	Metagenome	229	Y
F035639	Metagenome	171	Y
F044237	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000157510	F044237	AGGA	LVTFKLNILAKKKIYPIQYVIILEPVYGNIKPLVYKADIYRGQEEDK
Ga0307507_1000157511	F035639	GAGG	MVNCLLDNNRILKERINGIGVVKVKLPLIKQFLGERLKLKGFLI
Ga0307507_100015753	F019457	GGA	MQTNNIIILGDNQFLALKEDKLVKANLIAKLKEKLSLTTPLLFNRCILSLNKDSIALR
Ga0307507_100015758	F002793	N/A	MDITPLVNNLEMLGIFKDKDKEEGDSVTDSLSIIL
Ga0307507_100015759	F002793	N/A	MDIIPLVNDLEILGIFKDKDKEEGDSVTDSLSIIL