NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001575

Scaffold Ga0307507_10001575


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001575 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50569
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002793Metagenome529Y
F019457Metagenome229Y
F035639Metagenome171Y
F044237Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000157510F044237AGGALVTFKLNILAKKKIYPIQYVIILEPVYGNIKPLVYKADIYRGQEEDK
Ga0307507_1000157511F035639GAGGMVNCLLDNNRILKERINGIGVVKVKLPLIKQFLGERLKLKGFLI
Ga0307507_100015753F019457GGAMQTNNIIILGDNQFLALKEDKLVKANLIAKLKEKLSLTTPLLFNRCILSLNKDSIALR
Ga0307507_100015758F002793N/AMDITPLVNNLEMLGIFKDKDKEEGDSVTDSLSIIL
Ga0307507_100015759F002793N/AMDIIPLVNDLEILGIFKDKDKEEGDSVTDSLSIIL

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