Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001526 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	51613
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

51613

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F003457	Metagenome	485	Y
F009949	Metagenome	310	Y
F014479	Metagenome / Metatranscriptome	262	Y
F020829	Metagenome	221	Y
F038927	Metagenome / Metatranscriptome	164	Y
F041034	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000152610	F014479	AGTAG	VTVIEGVCVFLSVASNCRYTRVFKLLVHLGVRAYLAVLPRGLYCRNLLLLEGPSCLSATAVHKVFVEFLFRSLRDFKGG
Ga0307507_1000152611	F009949	GAGG	MVNAIGGKYLRALRRPNKGRKYNGNTPKNRNNRTKRLALLGRCPSR
Ga0307507_1000152613	F003457	N/A	MAGLVCFFNTKAFLILAIVTAKIICLGFLVSYINRVAPIMWISKVLSGLKSSLVSYMVLGLVLGTKLVLDLGLGSLSNLFIVEYQFF
Ga0307507_1000152614	F041034	GAG	MWFSIISGFLVDVSGILMLVEFGGILGLVELGRLFRCRVDISGNFRLVDPGGFFRFWFRV
Ga0307507_100015262	F020829	AGGA	VPLVSSKLITNIMFSVCGTPLTLGLYTLIICIRLLYVWIVITAMSGLTACHNHKDRLIALLIIKHMRIAAFGLYRSWNPQGQYVNYV
Ga0307507_100015266	F000247	AGG	VQTNTIHIVLSYKRTPCTEVARTNYLASSLNTFVDITLVPSSGVPFAYMSTDGKPYYNGGLFLNKSIDLTSTGL
Ga0307507_100015268	F038927	GGA	MKALPKQRFQSFVNMIGMVGMKEQLDEEKQLEDLREKVRARRKDLDKIMV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10001526

Overview

Ecosystem & Geography

Associated Families

Sequences