Scaffold Ga0307507_10001505

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001505
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52024
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (36.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006298	Metagenome	376	Y
F016500	Metagenome	246	Y
F062472	Metagenome	130	Y
F078050	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000150510	F078050	N/A	MIGMVDIKEQLDKEKQLEDLRDGIRARQKDLDEITV
Ga0307507_1000150513	F062472	GGAG	LFFKLIKGLPIYGVKVKGLVLLDKAAKGLSNSTIVFNKVLVEVIET
Ga0307507_1000150526	F006298	N/A	MERGLVIKNSNGLYTIYLTILSKVLVGRVVLNFHIYKKLFGLISLTLKILYAFILNQEALEVGYSNLIISNIFYTLAKLIICLLSLIKRMPN
Ga0307507_100015057	F016500	N/A	MVEVIEAKKGLDTFYCIKGFLIAYCLNLLRVNFNSFYTNDKPEVLYSLYSKFAFLNINL