Scaffold Ga0307507_10001493

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001493
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52195
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Cryomyces → Cryomyces minteri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F003457	Metagenome	485	Y
F005943	Metagenome	385	Y
F015182	Metagenome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100014932	F005943	AGG	MSRNGGNGYRAYVFEESTRRCAIDRKGRGRKEVIYLRVADVSYTRGIRGSMGLSYGGLCGGVP
Ga0307507_1000149320	F005943	AGG	MSRNAGNGYKAYVFGESTRRCAIDRKDRGRKEVIYPRVADISCTRGVRESTGFSYGGPCGRVP
Ga0307507_1000149322	F015182	AGG	VNVVIVVAGGCVTKAISDFFKEIFLVFSVVLGKDSGIFLEFNIELVK
Ga0307507_100014933	F000630	GAG	MGVKGTEANLGKRNLSHNIVNTIGGKYLRAPRGPNKGRKYNGNTIKNRNNRTKRLALLGRCPSR
Ga0307507_100014939	F003457	N/A	MYSGFLASYTSRVALIIYIFKVLSELKLSLVSYIVSYSVLGLVLDLVLNIKLVLNLGLGSLSILFIVEYQFF