Scaffold Ga0307507_10001456

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001456
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52974
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (61.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003725	Metagenome	471	Y
F004663	Metagenome	428	Y
F050927	Metagenome	144	Y
F053802	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000145645	F050927	N/A	MLEYLVTKKEGIVYFIYKATPLLSIDADKETVCKVIKQYILKVYTILIPLVDLIFIL
Ga0307507_1000145646	F004663	AGGA	MGVLKESRLGNINKEGLLKNKSPKGDLRGAITKLLGVVSLAGGELVLLLPSLDKPY
Ga0307507_1000145647	F003725	GGAG	MNLYTDLKETAKLVQERIKRYYNTKRSKGPDLKEGDKVWLLYKNFKS
Ga0307507_1000145649	F053802	AGCAG	VLVDSRVTRNHILLKVVERMGLLYRQKEHLYPLITILGDQIAYKGGIINLKIGPI