Scaffold Ga0307507_10001364

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001364
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54657
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F056201	Metagenome	137	Y
F096933	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000136411	F000630	GAG	MGVKGIEVDLGKGNPSHSIGNTMGGKYLRAPRGPNKGRKYNGNTFKNRNNRTKRLALLGRCSSR
Ga0307507_1000136415	F002220	AGG	MHLLKSNSVFKLSFSFSFAIRFTFTSLSSLKAKNCSSPKIIILLVYMLIILNRVPIVVIRKYRLNIEVVIKSFSL
Ga0307507_1000136416	F000746	GGA	MVTVVGNTVEGTINNYKVKVEVLIEVYFEVITKRSAIFIKNRITG
Ga0307507_100013645	F096933	AGG	MHVIIIVTSGSVTKVIGNLFKEIFLVFSVVLKENSSIFLELNIELVK
Ga0307507_100013646	F056201	N/A	MAPSRSTKLKELNTLTRKIPYGRMPRGIIVVGVLREYLSIVYRGKEIN