Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001359 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54785
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (47.37%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

54785

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (47.37%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F004663	Metagenome	428	Y
F006298	Metagenome	376	Y
F024756	Metagenome	204	Y
F035578	Metagenome	171	Y
F064278	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000135911	F000746	N/A	MITTRLTKHIMAIVGNTVKGIINVNYKAIVEVLVEVYFKVIARRSAMFIKSQITS
Ga0307507_1000135912	F006298	GAG	LVIKNSNGLYAIYLTILSKVLVRRVVLNFHIYKELFGLINLTFKIFYAFVLNQEALEVGRSNFIISNASYTLTKLVICLLLLIKGVSS
Ga0307507_1000135914	F035578	GGA	MVARVGDMVEGIINIDYKAIVEVLVEVYLKTINRKNAIFIRSQIAS
Ga0307507_1000135915	F006298	N/A	MERRLVVKDSNGLCAIYLTILSEVLVGRVVLNFYIHKELFGLINLTLKIFFAFILNQEALEVGYSNLTISNVLCALVKLIICLLLSVKRVPS
Ga0307507_1000135919	F064278	N/A	LLYTTPLANARCNTPINPTTVTCFNYGKNSYFALSCPELKDIGNIKEIEEEETSNKSGKKEP
Ga0307507_100013594	F004663	AGGA	MEVSKESRLGNINKEGLPKNELPKGDLRGAIAELLRVVSLAGRELVLLLPSLDRPY
Ga0307507_100013596	F024756	AGGAG	MPIYSIAHYITVGESTSTNGLKCLMLYLGFIMAAGKIKVSNLYKTFLDLLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10001359

Overview

Ecosystem & Geography

Associated Families

Sequences