Scaffold Ga0307507_10001345

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001345
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54951
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F003725	Metagenome	471	Y
F016500	Metagenome	246	Y
F044237	Metagenome	154	Y
F064278	Metagenome	128	Y
F084969	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000134510	F016500	N/A	MDKLIVEVIETKKGLNTFYSIRGFPVTDCLNLFRVNFNSFYTNNKPKVLYLFYSKFIFPNINL
Ga0307507_1000134512	F084969	N/A	MPLKALVITPSMAATTLGSRGDTSIRDTDSQLVITGQLQEMVN
Ga0307507_100013453	F000630	GGAG	MGVKGTEANLSKRNPSRSMVNAIGGKHLKALRRPNKGRKYNGNTLKNRGNRTKRLALLGRCPSR
Ga0307507_100013455	F044237	N/A	MKIYPIQHITMLKPVHGNVKPLVYKVDTYKGQEEDK
Ga0307507_100013456	F003725	GGAG	MNLYADLKEIAKLVQEQIKRYYNAKRSKGPDLKEGDKVWLLYKNFKS
Ga0307507_100013458	F064278	N/A	VVVTTYPQAISKLLYTIPLANAYYNTLINPATVICFNYRKDSYFALSYLELKDISNIKEIEKEKTSNKLGKEEP